Here is the association table of sample names and conditions, colored with respect to condition color used in figures.

File.names Conditions
SCV035 Control
SCV036 G0/G1 phase
SCV037 G2/M phase

The Aim of Distriburion Analysis

This part of document includes figures representing the distribution of labels associated with samples. Can give idea about percentage distributions of classes (like: “no signal”, “infection”, “infection&lysis”) and distribution of problematic samples (like: “dirt”, “dried out”, “multiple infections”)

Distibutions

Here once more the figures side by side

Distribution of DDOM

The Aim of Single Variable Analysis

This part of document includes single variable figures associated with samples. We focus on 5 parameters: maximum, shape, midpoint, infection time, start point. For all parameters we investigate either the entire set of infections (i.e both “infection” and “infection & lysis”), or we only investigate the “infection & lysis” cases.

For each figure we include tables showing p-values from t.test, Mann-Whitney U Test (wilcox.test), ,ean differences between conditions and the effect size. The tables also show the sample size for each condition.

Maximum

ttest. adjusted p values

Maximum Distribution (inf + infLys)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 1.00000 1.00000 163
G0/G1 phase 1.00000 1.00000 1.00000 264
G2/M phase 1.00000 1.00000 1.00000 143
numSamples 163 264 143

Mann-Whitney U Test, adjusted p values

Maximum Distribution (inf + infLys)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 1.00000 1.00000 163
G0/G1 phase 1.00000 1.00000 1.00000 264
G2/M phase 1.00000 1.00000 1.00000 143
numSamples 163 264 143

Diffrence between means

Maximum Distribution (inf + infLys)

Control G0/G1 phase G2/M phase numSamples
Control 0.00000 0.04023 0.03071 163
G0/G1 phase 0.04023 0.00000 0.07095 264
G2/M phase 0.03071 0.07095 0.00000 143
numSamples 163 264 143

effect size needed for Power = 0.95 and sig.level = 0.05

Maximum Distribution (inf + infLys)

Control G0/G1 phase G2/M phase numSamples
Control 3.199e-01 2.750e-01 3.518e-01 163
G0/G1 phase 2.750e-01 2.288e-01 3.064e-01 264
G2/M phase 3.518e-01 3.064e-01 3.835e-01 143
numSamples 163 264 143

ttest. adjusted p values

Maximum Distribution (infLys)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 1.00000 1.00000 135
G0/G1 phase 1.00000 1.00000 1.00000 220
G2/M phase 1.00000 1.00000 1.00000 122
numSamples 135 220 122

Mann-Whitney U Test, adjusted p values

Maximum Distribution (infLys)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 1.00000 1.00000 135
G0/G1 phase 1.00000 1.00000 1.00000 220
G2/M phase 1.00000 1.00000 1.00000 122
numSamples 135 220 122

Diffrence between means

Maximum Distribution (infLys)

Control G0/G1 phase G2/M phase numSamples
Control 0.00000 0.10094 0.03836 135
G0/G1 phase 0.10094 0.00000 0.06257 220
G2/M phase 0.03836 0.06257 0.00000 122
numSamples 135 220 122

effect size needed for Power = 0.95 and sig.level = 0.05

Maximum Distribution (infLys)

Control G0/G1 phase G2/M phase numSamples
Control 3.358e-01 2.897e-01 3.810e-01 135
G0/G1 phase 2.897e-01 2.419e-01 3.331e-01 220
G2/M phase 3.810e-01 3.331e-01 4.246e-01 122
numSamples 135 220 122

ttest. adjusted p values

Maximum Distribution (inf)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 0.40314 0.40314 28
G0/G1 phase 0.40314 1.00000 1.00000 44
G2/M phase 0.40314 1.00000 1.00000 21
numSamples 28 44 21

Mann-Whitney U Test, adjusted p values

Maximum Distribution (inf)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 0.67374 0.67374 28
G0/G1 phase 0.67374 1.00000 1.00000 44
G2/M phase 0.67374 1.00000 1.00000 21
numSamples 28 44 21

Diffrence between means

Maximum Distribution (inf)

Control G0/G1 phase G2/M phase numSamples
Control 0.00000 0.23792 0.29175 28
G0/G1 phase 0.23792 0.00000 0.05383 44
G2/M phase 0.29175 0.05383 0.00000 21
numSamples 28 44 21

effect size needed for Power = 0.95 and sig.level = 0.05

Maximum Distribution (inf)

Control G0/G1 phase G2/M phase numSamples
Control 5.847e-01 5.865e-01 6.557e-01 28
G0/G1 phase 5.865e-01 5.637e-01 6.629e-01 44
G2/M phase 6.557e-01 6.629e-01 7.268e-01 21
numSamples 28 44 21

Here are the figures side by side

Following is the violin graph representing the distribution of maximums

Slope

ttest. adjusted p values

Slope Distribution (inf + infLys)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 0.63396 0.78480 163
G0/G1 phase 0.63396 1.00000 1.00000 264
G2/M phase 0.78480 1.00000 1.00000 143
numSamples 163 264 143

Mann-Whitney U Test, adjusted p values

Slope Distribution (inf + infLys)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 1.00000 1.00000 163
G0/G1 phase 1.00000 1.00000 1.00000 264
G2/M phase 1.00000 1.00000 1.00000 143
numSamples 163 264 143

Diffrence between means

Slope Distribution (inf + infLys)

Control G0/G1 phase G2/M phase numSamples
Control 0.00000 0.10278 0.07972 163
G0/G1 phase 0.10278 0.00000 0.02307 264
G2/M phase 0.07972 0.02307 0.00000 143
numSamples 163 264 143

effect size needed for Power = 0.95 and sig.level = 0.05

Slope Distribution (inf + infLys)

Control G0/G1 phase G2/M phase numSamples
Control 2.752e-01 2.227e-01 2.581e-01 163
G0/G1 phase 2.227e-01 1.704e-01 2.052e-01 264
G2/M phase 2.581e-01 2.052e-01 2.360e-01 143
numSamples 163 264 143

ttest. adjusted p values

Slope Distribution (infLys)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 0.22656 0.27285 135
G0/G1 phase 0.22656 1.00000 1.00000 220
G2/M phase 0.27285 1.00000 1.00000 122
numSamples 135 220 122

Mann-Whitney U Test, adjusted p values

Slope Distribution (infLys)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 0.16710 0.26751 135
G0/G1 phase 0.16710 1.00000 1.00000 220
G2/M phase 0.26751 1.00000 1.00000 122
numSamples 135 220 122

Diffrence between means

Slope Distribution (infLys)

Control G0/G1 phase G2/M phase numSamples
Control 0.00000 0.14653 0.13261 135
G0/G1 phase 0.14653 0.00000 0.01392 220
G2/M phase 0.13261 0.01392 0.00000 122
numSamples 135 220 122

effect size needed for Power = 0.95 and sig.level = 0.05

Slope Distribution (infLys)

Control G0/G1 phase G2/M phase numSamples
Control 3.052e-01 2.468e-01 2.843e-01 135
G0/G1 phase 2.468e-01 1.885e-01 2.254e-01 220
G2/M phase 2.843e-01 2.254e-01 2.584e-01 122
numSamples 135 220 122

ttest. adjusted p values

Slope Distribution (inf)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 1.00000 1.00000 28
G0/G1 phase 1.00000 1.00000 1.00000 44
G2/M phase 1.00000 1.00000 1.00000 21
numSamples 28 44 21

Mann-Whitney U Test, adjusted p values

Slope Distribution (inf)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 0.77115 0.77115 28
G0/G1 phase 0.77115 1.00000 1.00000 44
G2/M phase 0.77115 1.00000 1.00000 21
numSamples 28 44 21

Diffrence between means

Slope Distribution (inf)

Control G0/G1 phase G2/M phase numSamples
Control 0.00000 0.10150 0.14763 28
G0/G1 phase 0.10150 0.00000 0.04613 44
G2/M phase 0.14763 0.04613 0.00000 21
numSamples 28 44 21

effect size needed for Power = 0.95 and sig.level = 0.05

Slope Distribution (inf)

Control G0/G1 phase G2/M phase numSamples
Control 4.987e-01 4.370e-01 5.338e-01 28
G0/G1 phase 4.370e-01 3.733e-01 4.742e-01 44
G2/M phase 5.338e-01 4.742e-01 5.659e-01 21
numSamples 28 44 21

Here are the figures side by side

Following is the violin graph representing the distribution of slopes

Midpoint

ttest. adjusted p values

Midpoint Distribution (inf + infLys)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 0.54054 1.00000 163
G0/G1 phase 0.54054 1.00000 0.54054 264
G2/M phase 1.00000 0.54054 1.00000 143
numSamples 163 264 143

Mann-Whitney U Test, adjusted p values

Midpoint Distribution (inf + infLys)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 1.00000 1.00000 163
G0/G1 phase 1.00000 1.00000 1.00000 264
G2/M phase 1.00000 1.00000 1.00000 143
numSamples 163 264 143

Diffrence between means

Midpoint Distribution (inf + infLys)

Control G0/G1 phase G2/M phase numSamples
Control 0.00000 0.35221 0.02948 163
G0/G1 phase 0.35221 0.00000 0.38169 264
G2/M phase 0.02948 0.38169 0.00000 143
numSamples 163 264 143

effect size needed for Power = 0.95 and sig.level = 0.05

Midpoint Distribution (inf + infLys)

Control G0/G1 phase G2/M phase numSamples
Control 9.700e-01 9.701e-01 1.002e+00 163
G0/G1 phase 9.701e-01 9.253e-01 1.010e+00 264
G2/M phase 1.002e+00 1.010e+00 1.032e+00 143
numSamples 163 264 143

ttest. adjusted p values

Midpoint Distribution (infLys)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 1.00000 1.00000 135
G0/G1 phase 1.00000 1.00000 1.00000 220
G2/M phase 1.00000 1.00000 1.00000 122
numSamples 135 220 122

Mann-Whitney U Test, adjusted p values

Midpoint Distribution (infLys)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 1.00000 1.00000 135
G0/G1 phase 1.00000 1.00000 1.00000 220
G2/M phase 1.00000 1.00000 1.00000 122
numSamples 135 220 122

Diffrence between means

Midpoint Distribution (infLys)

Control G0/G1 phase G2/M phase numSamples
Control 0.00000 0.15224 0.13819 135
G0/G1 phase 0.15224 0.00000 0.01406 220
G2/M phase 0.13819 0.01406 0.00000 122
numSamples 135 220 122

effect size needed for Power = 0.95 and sig.level = 0.05

Midpoint Distribution (infLys)

Control G0/G1 phase G2/M phase numSamples
Control 8.400e-01 7.772e-01 8.994e-01 135
G0/G1 phase 7.772e-01 6.972e-01 8.351e-01 220
G2/M phase 8.994e-01 8.351e-01 9.586e-01 122
numSamples 135 220 122

ttest. adjusted p values

Midpoint Distribution (inf)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 0.37926 1.00000 28
G0/G1 phase 0.37926 1.00000 0.32910 44
G2/M phase 1.00000 0.32910 1.00000 21
numSamples 28 44 21

Mann-Whitney U Test, adjusted p values

Midpoint Distribution (inf)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 0.64082 0.64082 28
G0/G1 phase 0.64082 1.00000 0.48414 44
G2/M phase 0.64082 0.48414 1.00000 21
numSamples 28 44 21

Diffrence between means

Midpoint Distribution (inf)

Control G0/G1 phase G2/M phase numSamples
Control 0.00000 1.43069 0.56831 28
G0/G1 phase 1.43069 0.00000 1.99900 44
G2/M phase 0.56831 1.99900 0.00000 21
numSamples 28 44 21

effect size needed for Power = 0.95 and sig.level = 0.05

Midpoint Distribution (inf)

Control G0/G1 phase G2/M phase numSamples
Control 3.326e+00 3.481e+00 3.669e+00 28
G0/G1 phase 3.481e+00 3.436e+00 3.878e+00 44
G2/M phase 3.669e+00 3.878e+00 4.008e+00 21
numSamples 28 44 21

Here are the figures side by side

Following is the violin graph representing the distribution of midpoints

Infection Time

ttest. adjusted p values

infection time Distribution (inf + infLys)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 1.00000 1.00000 163
G0/G1 phase 1.00000 1.00000 1.00000 264
G2/M phase 1.00000 1.00000 1.00000 143
numSamples 163 264 143

Mann-Whitney U Test, adjusted p values

infection time Distribution (inf + infLys)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 1.00000 1.00000 163
G0/G1 phase 1.00000 1.00000 1.00000 264
G2/M phase 1.00000 1.00000 1.00000 143
numSamples 163 264 143

Diffrence between means

infection time Distribution (inf + infLys)

Control G0/G1 phase G2/M phase numSamples
Control 0.00000 0.15185 0.02555 163
G0/G1 phase 0.15185 0.00000 0.12630 264
G2/M phase 0.02555 0.12630 0.00000 143
numSamples 163 264 143

effect size needed for Power = 0.95 and sig.level = 0.05

infection time Distribution (inf + infLys)

Control G0/G1 phase G2/M phase numSamples
Control 6.864e-01 6.441e-01 6.482e-01 163
G0/G1 phase 6.441e-01 5.855e-01 6.181e-01 264
G2/M phase 6.482e-01 6.181e-01 5.986e-01 143
numSamples 163 264 143

ttest. adjusted p values

infection time Distribution (infLys)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 1.00000 1.00000 135
G0/G1 phase 1.00000 1.00000 1.00000 220
G2/M phase 1.00000 1.00000 1.00000 122
numSamples 135 220 122

Mann-Whitney U Test, adjusted p values

infection time Distribution (infLys)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 0.34662 0.34662 135
G0/G1 phase 0.34662 1.00000 1.00000 220
G2/M phase 0.34662 1.00000 1.00000 122
numSamples 135 220 122

Diffrence between means

infection time Distribution (infLys)

Control G0/G1 phase G2/M phase numSamples
Control 0.00000 0.20606 0.14260 135
G0/G1 phase 0.20606 0.00000 0.06346 220
G2/M phase 0.14260 0.06346 0.00000 122
numSamples 135 220 122

effect size needed for Power = 0.95 and sig.level = 0.05

infection time Distribution (infLys)

Control G0/G1 phase G2/M phase numSamples
Control 6.813e-01 6.007e-01 6.398e-01 135
G0/G1 phase 6.007e-01 5.140e-01 5.655e-01 220
G2/M phase 6.398e-01 5.655e-01 5.887e-01 122
numSamples 135 220 122

ttest. adjusted p values

infection time Distribution (inf)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 1.00000 1.00000 28
G0/G1 phase 1.00000 1.00000 1.00000 44
G2/M phase 1.00000 1.00000 1.00000 21
numSamples 28 44 21

Mann-Whitney U Test, adjusted p values

infection time Distribution (inf)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 1.00000 1.00000 28
G0/G1 phase 1.00000 1.00000 1.00000 44
G2/M phase 1.00000 1.00000 1.00000 21
numSamples 28 44 21

Diffrence between means

infection time Distribution (inf)

Control G0/G1 phase G2/M phase numSamples
Control 0.00000 0.08413 0.46038 28
G0/G1 phase 0.08413 0.00000 0.37625 44
G2/M phase 0.46038 0.37625 0.00000 21
numSamples 28 44 21

effect size needed for Power = 0.95 and sig.level = 0.05

infection time Distribution (inf)

Control G0/G1 phase G2/M phase numSamples
Control 2.110e+00 2.328e+00 2.190e+00 28
G0/G1 phase 2.328e+00 2.365e+00 2.488e+00 44
G2/M phase 2.190e+00 2.488e+00 2.244e+00 21
numSamples 28 44 21

Here are the figures side by side

Following is the violin graph representing the distribution of infection time

Start point

ttest. adjusted p values

Start point (inf + infLys)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 0.81894 1.00000 163
G0/G1 phase 0.81894 1.00000 0.81894 264
G2/M phase 1.00000 0.81894 1.00000 143
numSamples 163 264 143

Mann-Whitney U Test, adjusted p values

Start point (inf + infLys)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 1.00000 1.00000 163
G0/G1 phase 1.00000 1.00000 1.00000 264
G2/M phase 1.00000 1.00000 1.00000 143
numSamples 163 264 143

Diffrence between means

Start point (inf + infLys)

Control G0/G1 phase G2/M phase numSamples
Control 0.00000 0.27628 0.04225 163
G0/G1 phase 0.27628 0.00000 0.31854 264
G2/M phase 0.04225 0.31854 0.00000 143
numSamples 163 264 143

effect size needed for Power = 0.95 and sig.level = 0.05

Start point (inf + infLys)

Control G0/G1 phase G2/M phase numSamples
Control 9.144e-01 9.348e-01 9.519e-01 163
G0/G1 phase 9.348e-01 9.045e-01 9.792e-01 264
G2/M phase 9.519e-01 9.792e-01 9.889e-01 143
numSamples 163 264 143

ttest. adjusted p values

start point Distribution (infLys)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 1.00000 1.00000 135
G0/G1 phase 1.00000 1.00000 1.00000 220
G2/M phase 1.00000 1.00000 1.00000 122
numSamples 135 220 122

Mann-Whitney U Test, adjusted p values

start point Distribution (infLys)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 1.00000 1.00000 135
G0/G1 phase 1.00000 1.00000 1.00000 220
G2/M phase 1.00000 1.00000 1.00000 122
numSamples 135 220 122

Diffrence between means

start point Distribution (infLys)

Control G0/G1 phase G2/M phase numSamples
Control 0.00000 0.04921 0.06689 135
G0/G1 phase 0.04921 0.00000 0.01767 220
G2/M phase 0.06689 0.01767 0.00000 122
numSamples 135 220 122

effect size needed for Power = 0.95 and sig.level = 0.05

start point Distribution (infLys)

Control G0/G1 phase G2/M phase numSamples
Control 7.857e-01 7.457e-01 8.510e-01 135
G0/G1 phase 7.457e-01 6.835e-01 8.081e-01 220
G2/M phase 8.510e-01 8.081e-01 9.158e-01 122
numSamples 135 220 122

ttest. adjusted p values

start point Distribution (inf)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 0.37575 1.00000 28
G0/G1 phase 0.37575 1.00000 0.37575 44
G2/M phase 1.00000 0.37575 1.00000 21
numSamples 28 44 21

Mann-Whitney U Test, adjusted p values

start point Distribution (inf)

Control G0/G1 phase G2/M phase numSamples
Control 1.00000 0.66054 1.00000 28
G0/G1 phase 0.66054 1.00000 0.66054 44
G2/M phase 1.00000 0.66054 1.00000 21
numSamples 28 44 21

Diffrence between means

start point Distribution (inf)

Control G0/G1 phase G2/M phase numSamples
Control 0.00000 1.47275 0.33812 28
G0/G1 phase 1.47275 0.00000 1.81087 44
G2/M phase 0.33812 1.81087 0.00000 21
numSamples 28 44 21

effect size needed for Power = 0.95 and sig.level = 0.05

start point Distribution (inf)

Control G0/G1 phase G2/M phase numSamples
Control 3.408e+00 3.573e+00 3.690e+00 28
G0/G1 phase 3.573e+00 3.531e+00 3.926e+00 44
G2/M phase 3.690e+00 3.926e+00 3.959e+00 21
numSamples 28 44 21

Here are the figures side by side

Following is the violin graph representing the distribution of start point

The Aim

This document includes double variable figures associated with samples. For all parameters we investigate either the entire set of infections (i.e both “infection” and “infection & lysis”), or we only investigate the “infection & lysis” cases. For each graph we plot density and point versions.

The investigated parameter couples are

1.) Midpoint vs Slope 2.) Slope vs Maximum 3.) Midpoint vs Maximum

Midpoint vs Slope

Slope vs Maximum

Midpoint vs Maximum